| First Name |
Last Name |
Title of Abstract |
| Shanmugam |
Achiraman |
Evolutionary Significance of Proteins in Intra-specific Communication in Animal Kingdom |
| Claudia |
Acquisti |
Oxygen limitation of transmembrane proteins composition across macroevolutionary time scales |
| Curtis |
Adams |
Stochastic Assembly of a Consensus Sequence for the Pan troglodytes Ribosomal Repeat. |
| Brian |
Aevermann |
The Duplication and Retention of the sHsp Gene Family in Caenorhabditis elegans and Caenorhabditis briggsae. |
| Montserrat |
Aguade |
Effects of selection, demography and recombination on levels and patterns of variation |
| Hiroshi |
Akashi |
Metabolic economics and microbial proteome evolution |
| Christopher |
Altamirano |
Characterization of polarized cell growth in the fungus Rhizopus (Zygomycota) |
| Yael |
Aminetzach |
Peculiar Parallel Evolution at the CHKov Gene Family in the Two Commensal Sibling Species:D. melanogaster and D. simulans |
| Greg |
Amoutzias |
Evolution and function of transcription factor interaction networks: Gene expansions, loss of interactions and functional consequences in the bZIP dimerization network. |
| Peter |
Andolfatto |
Constraint and adaptive evolution in coding and non-coding DNA of Drosophila |
| Aida |
Andres |
Signals of balancing selection in the human genome |
| Jose |
Andres |
Molecular evolution of seminal proteins in field crickets |
| FISTON |
Anna-Sophie |
A DDSA model of segmental duplication formation in Drosophila melanogaster genome : the role of transposable elements |
| Fischer |
Anne |
Ape subspecies? A genetic perspective |
| John |
Archibald |
Complete nucleomorph genome sequence of the cryptomonad Hemiselmis rufescens |
| Roman |
Arguello |
Origination of an X-linked Testes Chimeric Gene by Illegitimate Recombination in Drosophila |
| Anne-Muriel |
Arigon |
Automated homologous sequence identification |
| William |
Atchley |
What is a Myc Protein? |
| William |
Atchley |
Computational Biology and DNA Binding Specificity |
| James |
Austin |
Evolutionary genetics of the endemic Florida bog frog, Lithobates okaloosae. |
| John |
Avise |
Application of Time Trees in Evolutionary Biology |
| Philip |
Awadalla |
The Evolutionary Genomics of Plasmodium falciparum |
| Nadia |
Ayoub |
An EST approach to phylogeny: A case study using elongation factor-1 gamma to unravel the time line of spider evolution |
| Doris |
Bachtrog |
The temporal dynamics of Y-chromosome degeneration |
| Yongsheng |
Bai |
Annotation of retrogenes in Drosophila and analysis of their newly recruited regulatory regions |
| Sandra |
Baldauf |
Molecular Phylogeny and Morphological Evolution in Social Amoebas |
| Laura |
Baldo |
Endosymbiosis and molecular evolution: insights from the intracellular bacteria Wolbachia |
| Laszlo |
Barabasi |
Network Biology: From protein interactions to human diseases |
| Daniel |
Barbash |
Recurrent positive selection in the hybrid incompatibility gene Hmr. |
| Bridget |
Barker |
GENOMIC ANALYSES OF COCCIDIOIDES, A CRYPTICALLY SEXUAL HUMAN PATHOGENIC FUNGUS |
| Holly |
Basta |
Identification of Retroid Agents in Tetraodon nigroviridis (pufferfish) and Danio rerio (zebrafish): A Comparative Analysis |
| Fabia Ursula |
Battistuzzi |
Expanding the phylogeny and timing of prokaryotes |
| Peter |
Beerli |
Improve quasirandom numbers MCMC approximations in population genetics? |
| Steffen |
Beisswanger |
Temporal and spatial dynamics of demography and selection in D. melanogaster populations from Africa, Europe and SE-Asia |
| Steven |
Benner |
Experimental Paleogenetics |
| Michael |
Benton |
Dating the tree of life |
| Casey |
Bergman |
Microevolution of highly conserved noncoding sequences in Drosophila: implications for cis-regulatory evolution. |
| Esther |
Betran |
Identification of regulatory regions in Drosophila retrogenes |
| Debashish |
Bhattacharya |
Single, ancient origin of a plastid metabolite translocator family in Plantae from an endomembrane-derived ancestor |
| Debashish |
Bhattacharya |
Dating key nodes in the microbial eukaryote tree of life |
| Jaime |
Blair |
Genomic Clocks and the Evolution of the Opisthokonts |
| Tine |
Blomme |
The gain and loss of genes during 600 million years of vertebrate evolution |
| Michael |
Blum |
Which random processes describe the tree of life? A large-scale study of phylogenetic tree imbalance. |
| Stephane |
Boissinot |
Selection against LINE-1 retrotransposons results from their ability to mediate ectopic recombination |
| Franky |
Bossuyt |
Earth history and the rise of modern amphibians |
| Amy |
Bouck |
Paleopolyploidy in the plant Mimulus: insights from ESTs |
| Matthieu |
Boulesteix |
Insertion polymorphism of transposable elements in natural populations of Anopheles gambiae in Cameroon |
| Bastien |
Boussau |
Efficient Likelihood Computations with Non-Reversible Models of Evolution |
| Adam |
Boyko |
Quantifying the distribution of selective effects among newly arising mutations in the human genome |
| Jason |
Bragg |
Variation among species in the elemental composition of genomes and proteomes |
| Evan |
Braswell |
Evolution of reproductive proteins in ground crickets of the genus Allonemobius |
| Kirsten |
Bratke |
Association of Alu Elements with Synteny Breakregions in the Human Genome |
| Jamie |
Bridgham |
Mechanistic Basis for Specific Receptor-Hormone Interactions |
| Adriana |
Briscoe |
Adaptive evolution of the long wavelength-sensitive visual pigment in a mimetic butterfly complex |
| Thomas |
Brody |
Decoding cis-regulatory sequences involved in coordinate gene expression in Drosophila |
| Richard |
Broughton |
Spatial covariation of mutation and nonsynonymous substitution rates in vertebrate mitochondrial genomes |
| Celeste |
Brown |
Evolution of Unstructured Protein |
| Jeremy |
Brown |
Bayes Factors and Partition Choice in Phylogenetic Inference |
| Sarah |
Burgess Herbert |
Volcanoes, vicariance, and vagility – phylogeography, genetic diversity and population history of a recent minor radiation of Hawaiian birds |
| Sarah |
Burgess Herbert |
A multipronged approach for dissecting complex traits: Combining comparative genomics, classical genetics, and bioinformatics |
| Carlos |
Bustamante |
Assessing the Evolutionary Consequences of Amino Acid Variation in the Human Genome |
| Kevin |
Byrne |
Independence of gene losses in two yeast species descended from the same polyploidization event |
| Jake |
Byrnes |
Detection of gene conversions between yeast duplicate gene pairs via a phylogenetic hidden Markov model |
| Graciela |
Cabana |
South American population genetic structure and history: the Y perspective. |
| Gustavo |
Caetano-Anolles |
The origins of modern metabolism revealed by phylogenomic analysis of protein structure |
| James J. |
Cai |
PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution |
| Zheng |
Cai |
Bacterial Genome Alignments and Genomic Islands: a Pseudomonas syringae Case Study |
| Ana |
Caicedo |
The levels and patterns of nucleotide polymorphism in the rice genome |
| Emilio |
Campos |
Comparative evolutionary analysis of olfactory receptor genes between Drosophila simulans and Drosophila melanogaster |
| Liran |
Carmel |
A general model of intron gain and loss in eukaryotic genes |
| Amber |
Carmon |
Concerted Evolution in the insect Dumpy Gene |
| Sarah |
Carnahan |
Effects of social structure and sperm competition on the molecular evolution of TGM4 in primates: nucleotide variation within and between hominoid species |
| Sean |
Carroll |
Endless Flies Most Beautiful: The Role of Cis-Regulatory Sequences in the Evolution of Novelty and Diversity |
| Antonio |
Carvalho |
Origin and evolution of the Drosophila Y chromosome |
| Christian |
Castaldo |
Nitrogen limitation in spider silk: A phylogenetic approach |
| Aravinda |
Chakravarti |
Genomic Variation in Human Disease |
| Belinda |
Chang |
Reconstructing ancestral visual pigments: the origins of rods |
| Shu-Miaw |
Chaw |
Expansion and contraction of the inverted repeat (IR) in monocots: an evolutionary tug of war |
| Stephen |
Chelladurai |
GENE EXPRESSION ANALYSIS FOR CHOLINESTERASE HOMOLOGS IN PLANTS |
| Christina |
Chen |
the strength of selection on ultraconserved elements |
| Hua |
Chen |
A Hidden Markov Model for Detecting Recent Positive Selection through Haplotype Structure |
| Song |
Chen |
Identification of multiple novel transposons within or in close proximity to xenobiotic-metabolizing cytochrome P450 genes in Helicoverpa zea |
| Soochin |
Cho |
Evolution of the Complementary Sex-Determination Gene of Honey Bees: Balancing Selection and Trans-Species Polymorphisms |
| Soochin |
Cho |
Ancient expansion of the ribonuclease A superfamily revealed by genomic analysis of placental and marsupial mammals |
| Sang Chul |
Choi |
The Impact of tertiary structure on protein evolution and a population genetic interpretation |
| Landry |
Christian |
MUTATIONAL VARIANCE OF GENE EXPRESSION IN YEAST |
| Jeffrey |
Chuang |
Selection in Synonymous Sites of Mammalian Genes |
| Andrew |
Clark |
Gene expression determinates of immunocompetence in the innate immune system of Drosophila melanogaster. |
| Andrew |
Clark |
Comparing X vs. autosomal human polymorphism and primate divergence |
| Nathaniel |
Clark |
Combining Proteomic and Evolutionary Data: Insights into Mammalian Seminal Proteins |
| Nathaniel |
Clark |
Female-Male Co-evolution: Sexual Conflict at Abalone Fertilization |
| Katrina |
Claw |
Evolution of the Amylase Gene Family in Primates |
| James |
Collins |
Biology as a bridge to the future |
| Josep |
Comeron |
Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans |
| Robin |
Cook Hill |
fem-Independent Hermaphroditism in Caenorhabditis briggsae |
| Jennifer |
Cork |
Characterizing three candidate balanced polymorphisms in Arabidopsis thaliana: a reverse genetics approach |
| Scott |
Cornman |
Phylogeograpic utility of transposon display markers in a non-model plant species. |
| James |
Cotton |
Understanding and evaluating the performance of supertree methods |
| Rafael |
Counago |
In vivo molecular evolution reveals biophysical origins of organismal fitness |
| Karen |
Cranston |
Summarizing a posterior distribution of phylogenies |
| Chris |
Creevey |
Inter-Domain gene acquisition in the archaea and extreme changes in physiology |
| Jack |
da Silva |
Site-Specific Amino Acid Frequency and Fitness in HIV-1 |
| Juliette |
de Meaux |
Cis-regulatory evolution of Chalcone-synthase expression in the genus Arabidopsis |
| Anthony |
Dean |
The Selective Cause of an Ancient Adaptation |
| Jed |
Dean |
Investigating the functional redundancy provided by duplicate genes |
| Matthew |
Dean |
Evolutionary genetics of male reproductive genes in house mice (Mus domesticus) |
| Jeffery |
Demuth |
A simple genetic mechanism explains the genomic movement and distribution of sex-biased genes |
| David |
Des Marais |
An Experimental Framework for Distinguishing Among Alternate Fates of Gene Duplicates |
| Anna |
Di Rienzo |
Ancestral susceptibility: a model for the evolution of common diseases |
| Hernán |
Dopazo |
Selective pressures at a codon-level predict deleterious mutations in human disease genes |
| Adi |
Doron-Faigenboim |
Converting empirical amino-acid replacement matrices into codon-based substitution matrices |
| Steve |
Dorus |
Evolution of the Sperm Proteome: New Genes and New Genetics Networks |
| Aaron |
Dossey |
Bioinformatic and Phylogenetic Analysis of the FMRFamide Like Multigene Neuropeptide Family in Phylum Nematoda |
| Andreas |
Dress |
Learning Molecular Evolution from Walter |
| Guy |
Drouin |
Processed pseudogenes and spontaneous substitutions in the Arabidopsis genome |
| D. Allan |
Drummond |
Protein misfolding as a dominant regulator of sequence evolution |
| Jill |
Duarte |
Evolutionary Dynamics of Single Copy Nuclear Genes in Flowering Plants |
| william |
Duax |
Multiple open reading frames, codon bias and the primordial genetic code |
| Elodie |
Duprat |
A combined approach for de novo identification and annotation of transposable elements in genomic sequences |
| Diana |
Durand |
Population history of the Ava of Paraguay: insights from Y-chromosome, mitochondrial, and Alu markers |
| Volodymyr |
Dvornyk |
Circadian System in Prokaryotes: Evolution Towards Complexity and Functional Specificity |
| Bhakti |
Dwivedi |
Alignment gaps and phylogenetic accuracy. A simulation study |
| Bhakti |
Dwivedi |
Whole genome comparison of H1N1 & H3N2 influenza 'A' virus |
| Alice |
Ecker |
Use of the basal liverwort Blasia pusilla as a model for understanding the evolution of gravitropism in plants |
| Scott |
Edwards |
Species trees from gene trees: resolution of phylogenetic relationships without concatenation |
| Jose Maria |
EIRIN-LOPEZ |
The footloose histone H1 and the fancy-free sperm nuclear basic proteins: we are a happy family! |
| Jonathan |
Eisen |
Phylogenomics and the diversification of microbes |
| Navin |
Elango |
Regional variation of CpG substitution rates in primate genomes |
| Eran |
Elhaik |
Compositional homogeneity: A benchmark for identifying “isochores" |
| Joanna |
Elson |
Keeping a watchful eye for mammalian mtDNA recombination |
| J.J. |
Emerson |
A genome-wide survey of copy number polymorphism and divergence within D.melanogaster and D. simulans |
| Ben |
Evans |
Evolution of a duplicated heterodimer: the struggle for persistence in an allopolyploid genome |
| Adam |
Eyre-Walker |
Quantifying the slightly deleterious model of molecular evolution |
| William |
Fagan |
Signatures of ecological resource availability in the animal and plant proteomes |
| Chuanzhu |
Fan |
New Functional Retroposed Genes Originated in Heterochromatic Region in Drosophila |
| Justin |
Fay |
A high rate of polymorphism in noncoding sequences identifies cis-regulatory mutations segregating in natural isolates of Saccharomyces cerevisiae |
| Joe |
Felsenstein |
PHYLIP |
| William |
Ferguson |
Balancing selection at the flavivirus resistance locus in the genus Mus |
| William |
Ferguson |
The evolution of the anti-viral Oas1 gene in primates |
| Alan |
Filipski |
The Effect of Selection, Polymorphism and Sequencing Error on Molecular Divergence Time Estimation |
| Anne |
Fischer |
Demographic history and genetic differentiation among great apes |
| Marla |
Fisher |
Evolved Responses to Diverse Stress of Brain Gene Expression in Natural Populations of Fundulus heteroclitus |
| Walter |
Fitch |
After the tree: from phylogeny to migration |
| David |
Fitzpatrick |
A Fungal phylogeny based on 42 complete genomes derived from supertree and concatenated gene analysis |
| Gregory |
Fournier |
Evolution of Methanogenesis: An Ancient Transfer Event? |
| Laurence |
Frabotta |
Another Look at Recent LINE-1 Retrotransposon Activity in the Chimpanzee Lineage |
| M. Pilar |
Francino |
Correlation between selection for efficiency at the transcriptional and translational levels in bacteria with different growth rates.
|
| M. Pilar |
Francino |
Phylogenomics and the ecology of genes. |
| Bryan |
Fry |
Assembling an Arsenal: The Origin and Evolution of Toxic Proteins in Reptile Venoms |
| Eric |
Gaidos |
Numerical Simulaiton of the Evolution of Developmental Regulatory Networks Governing Bodyplans and Behavior |
| Dave |
Galgoczy |
Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae |
| Eric |
Ganko |
Divergence in expression between duplicated genes in Arabidopsis |
| Beile |
Gao |
Conserved Indels and Signature Proteins Provide Novel and Powerful Molecular Means for Understanding Phylogeny |
| Hong |
Gao |
A Bayesian approach for Jointly Inferring Selfing Rates and Population Structure from Multi-Locus Genotype Data |
| Jessica |
Garb |
Modular architecture and concerted evolution of spider egg case silk genes |
| Ryan |
Garrick |
Very fine-scale phylogeography of a ‘giant’ Gondwanan Hexapod: integrating inferences across loci |
| Daniel |
Garrigan |
Inferring the Place of the Most Recent Common Ancestor |
| Audrey |
Gasch |
Variation in stress sensitivity and genomic expression in natural isolates of Saccharomyces |
| Eric |
Gaucher |
Inferring the paleoenvironment of ancient bacteria based on resurrected proteins |
| Kerry |
Geiler |
Independent Opsin Radiations By Gene Duplication in Arthropod Genomes |
| William |
Gelbart |
Comparative analysis of insect genomes |
| Gregory |
Gelembiuk |
Evolutionary Shifts in Gene Expression following Habitat Invasions |
| Armando |
Geraldes |
Contrasting patterns of introgression at X-linked loci across the hybrid zone between subspecies of the European rabbit (Oryctolagus cuniculus) |
| Brian |
Geyer |
Preventable Induction of Muscle Alternative Splicing in Organophosphate-Exposed Mice Treated with Recombinant Human Acetylcholinesterase |
| Yoav |
Gilad |
The evolution of gene regulation in primates |
| Erin |
Gill |
Effects of genome reduction on DNA repair processes in the microsporidian Encephalitozoon cuniculi |
| Cigdem |
Gokcek Sarac |
Mitochondrial DNA (MtDNA) Study Highlights Distinctiveness of Kangal and Akbash Dog Breeds in Turkey |
| Loretta |
Goldberg |
Extending gene families via predicted ancestral sequences |
| Brian |
Golding |
Fast evolution of laterally transferred genes. |
| Aiton |
Goldman |
Notung 2.1: Using duplication and loss to resolve ambiguous gene trees. |
| Josefa |
Gonzalez |
Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila |
| David |
Gonzalez Knowles |
High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis thaliana genes |
| Jeffrey |
Good |
Reproductive isolation and rapid molecular evolution on the mouse X chromosome |
| Valer |
Gotea |
Phylogenies: the key for validating short and divergent transposable elements |
| Linda |
Graham |
When did the first land plants appear and how did they change the world? Using modern organisms to interpret the fossil record. |
| Mary |
Granger |
Ecology and Evolution of the plant genus Impatiens in Africa |
| Ray |
Greek |
The Implications of Evolutionary Biology for Using Animals as Causal Analogical Models |
| Emma |
Griffiths |
The use of signature indels and whole proteins for defining major taxonomic groups and subgroups within Bacteria, and determining their branch order |
| Karl F. |
Gruber |
Phylogeny of South American marsupials using RAG1: the importance of choosing the right gene |
| Wendy |
Grus |
System-specific genes reveal an earlier origin of the vomeronasal system |
| Yongtao |
Guan |
Phylogenetic MCMC algorithms are not misleading on mixture of trees if one leads (proposes) right |
| Mary |
Guisinger-Bellian |
Organization and Evolution of Chloroplast Genomes in the Flowering Plant Family Geraniaceae |
| David |
Guttman |
Comparative genomics of host specificity and virulence in phytopathogenic bacteria |
| Andrea |
Habura |
Cold-Adaptation of Microtubule Assembly: An Environmental Approach to Tubulin Evolution in Foraminifera |
| Ahmad Reza |
Hadaegh |
CoccoExpress: A Comprehensive Genetic Database for Coccolithophorids |
| Karri |
Haen |
The Mitochondrial Genomes of Glass Sponges: Implications for Animal Evolution |
| Matthew |
Hahn |
The 17% solution: gene family divergence between human and chimpanzee |
| Ira |
Hall |
Copy Number Variation and Genetic Drift in the Inbred Mouse |
| Michael |
Hammer |
Multilocus Inference of Human Demographic History |
| Weilong |
Hao |
Gene translocation accelerates the fast evolution of laterally transferred genes. |
| Yuichiro |
Hara |
Identification of gene conversion events without phylogenetic information |
| Richard |
Harrington |
Evolution of the ATP Synthase Operon – A Genomic Perspective |
| Daniel |
Hartl |
Small RNA suppression of sex-ratio distortion in D. simulans |
| Stefanie |
Hartmann |
Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? |
| Naoki |
Hasegawa |
Sequential linking method for analysis of within host HIV-1 evolution under anti-HIV therapy by reconstructing longitudinal phylogenetic tree using serial virus samples |
| David |
Haussler |
Ultraconserved elements, living fossil transposons, distal enhancers, and mysterious RNA genes: reconstructing the detailed evolutionary history of the human genome. |
| Jennifer |
Hay |
Duplicated mitochondrial genes and rates of evolution |
| Ralph |
Haygood |
A genome-wide scan for evidence of positive selection on cis-regulatory regions during human origins |
| Einat |
Hazkani-Covo |
The Evolution of numts in Human and Chimpanzee |
| Xionglei |
He |
Reassessing functional compensation between duplicate genes |
| Blair |
Hedges |
Introductory Remarks
|
| Sarah |
Hennebry |
The evolution of the structure and function of transthyretin and transthyretin-like proteins |
| Crystal |
Hepp |
Automated identification and characterization of Retroid agents in four eukaryotic genomes: A comparative analysis of Homo sapiens, Pan troglodytes, Rattus norvegicus and Mus musculus |
| Ryan |
Hernandez |
Polymorphism and Divergence of Finite Sites Under a Context-Dependent Mutation Model |
| David |
Hibbett |
The mushrooming of mushrooms: higher-level phylogenetics of Basidiomycota |
| Kim |
Hielim |
Ongoing Darwinian selection for a mental activity related gene in human populations. |
| Asger |
Hobolth |
A Monte Carlo Expectation Maximization algorithm for statistical analysis of DNA sequence evolution with neighbour-dependent substitution rates |
| Federico |
Hoffmann |
Functional diversification of the alpha-globin gene family in mammals |
| Alisha |
Holloway |
Population genetic mechanisms associated with gene expression divergence |
| Don |
Hong |
Wavelet-Based Algorithm for MALDI-TOF MS Data Processing |
| Julie |
Horvath |
Deep phylogenetic sampling and lemur comparative genomics in the absence of BAC library resources |
| Derek |
Houston |
Phylogenetic affinities and biogeographic implications of evolution in a clade of western North American cyprinids |
| Robert |
Huether |
Multiple Open Reading Frames and Codon Bias in the Genome of Streptomyeis coelicolor and the Evolution of the Genetic Code |
| Austin |
Hughes |
Gene Duplication and the Properties of Biological Networks |
| Melanie |
Huntley |
Selection, not slippage, creating serine homopolymers. |
| Ui Wook |
Hwang |
Characterization of partial mitochondrial genomes from two marine tardigrade species and their phylogenetic implications |
| Ui Wook |
Hwang |
Complete mitochondrial genome of a Chinese scorpion Mesobuthus martensii: scorpion autapomorphies and phylogenetic position in chelicerates |
| Ui Wook |
Hwang |
Arthropod phylogeny inferred from tropomyosin amino acid residues |
| Ui Wook |
Hwang |
The first bryozoan mitochondrial genome: multiple noncoding regions and lophophorate polyphyly |
| Ui Wook |
Hwang |
Complete mitochondrial genome of a Korean millipede Anthrokoreana gracillipes (Order Julida) and its phylogenetic implication |
| Ui Wook |
Hwang |
Complete mitochondrial Genome of a cirriped Pollicipes mitella: mitochondrial protein phylogeny supports monophyletic Cirripedia and polyphyletic Maxillopoda |
| Ui Wook |
Hwang |
Mitochondrial protein phylogeny suggests that Pycnogonida joins with chelicerates. |
| Kazuho |
Ikeo |
Evolution of eye as origin of sensory organs |
| David |
Irwin |
Origin and Evolution of the Vertebrate Glucose-dependent Insulinotropic Polypeptide (GIP) Gene |
| Md Sajedul |
Islam |
POPULATION GENETIC STRUCTURE OF A MANGROVE TREE: Bruguiera gymnorrhiza (L.) IN IRIOMOTE ISLAND, JAPAN REVEALED BY THE ANALYIS OF NUCLEAR AND CHLOROPLAST MICROSATELLITE MARKERS |
| Mineyo |
Iwase |
Ectopic sequence exchanges in the Kallmann syndrome 1 gene region of primate sex chromosomes |
| Mattias |
Jakobsson |
A unique recent origin of the allotetraploid species Arabidopsis suecica: evidence from nuclear DNA markers |
| Jeffrey |
Jensen |
Inferring selection in the real world: demography, missing data and the problem of outliers |
| Siva |
Jetty |
Evolutionary dynamics of a LTR retrotransposon and its role in evolution of genome size in the genus Oryza |
| Cizhong |
Jiang |
Mutational spectrum in the recent human genome inferred by single nucleotide polymorphisms |
| Mitrick |
Johns |
Differentiation of the two rice subspecies indica and japonica: A Gene Ontology perspective |
| Deborah |
Johnson |
The monosaccharide transporter gene family in Arabidopsis thaliana and Oryza sativa: Patterns of subfamily expansion and sequence evolution |
| Philip |
Johnson |
Inference of population genetic parameters in metagenomics: a clean look at messy data |
| Campos |
Jose |
Selection and recombination in MHC |
| Ana Carolina |
Junqueira |
The mitochondrial genome of Chloroprocta idioidea (Diptera: Calliphoridae): insights and perspectives into dipteran mitochondrial genomics and phylogenetics. |
| Camila |
Junqueira Mazzoni |
Multilocus analysis and introgression between two New World Leishmania vectors |
| Satoko |
Kaneko |
Origin and evolution of processed pseudogenes that stabilize functional Makorin1 mRNAs in mice, primates and other mammals |
| Soundarapandian |
Kannan |
PURIFICATION AND SEQUENCE DETERMINATION OF MOUSE SEX PHEROMONE BINDING PROTEIN |
| Soundarapandian |
Kannan |
Classification and Association rules analysis on N-terminal Sequence of Mouse Sex Pheromone Binding Protein Structure Predictions |
| Soundarapandian |
Kannan |
Raising Polyclonal Antibody Against Pheromone Binding Protein In Swiss Mouse (Mus musculus) |
| Soundarapandioan |
Kannan |
Methyl Dibenzofuran: An effective mouse sex pheromone |
| Timothy |
Karr |
The brave new world of sperm proteomics |
| Alaine |
Keebaugh |
Comparative genomics and molecular evolution of the vertebrate HPRT-gene family |
| Paul |
Keim |
Clonal expansion of recent emerged pathogens - B. anthracis, Y. pestis and F. tularensis |
| Joanna |
Kelley |
Positive selection in primate tooth enamelin and evidence for human population specific adaptation |
| William |
Kelly |
Global Survey of Phylogenies of Interacting Proteins in Yeast |
| Julie |
Kerns |
Adaptive evolution of Zinc-finger Antiviral Protein (ZAP) in primates: genetic conflict at a protein-RNA interface? |
| Eunsoo |
Kim |
Kingdom-level phylogeny of eukaryotes with emphasis on the phylogenetic position of the heterotrophic flagellate Apusomonas probiscidea based on six-gene analysis. |
| Hee Shin |
Kim |
MANET: tracing evolution of protein architecture in metabolic networks. |
| Hielim |
Kim |
Ongoing Darwinian selection for a mental activity related gene in human populations. |
| Hyung-Cheol |
Kim |
Genome Sequence Analysis of Dlx3-7 Gene Cluster in Morphologically Diversified Mammalian Species |
| Su Yeon |
Kim |
Testing for Natural Selection on Conserved Non-genic Sequences in Mammals |
| Yuseob |
Kim |
Simple models of adaptation involving epistasis and genetic robustness |
| Sarah |
Kingan |
Maternal and paternal ancestry of western Siberian populations |
| Sarah |
Knapke |
Evolution of the ?-ketoacyl-CoA synthase gene family |
| Wen-Ya |
Ko |
Strong regional heterogeneity in base composition evolution on the Drosophila X chromosome |
| Michael |
Kohn |
'Rapid sequence divergence rates in the 5’ regulatory regions of young Drosophila melanogaster duplicate gene pairs' |
| Michael |
Kohn |
Genome wide inferences of cis-regulatory nucleotide polymorphism in Drosophila melanogaster |
| bryan |
kolaczkowski |
The Causes of Inaccurate Bayesian Posterior Probability |
| Eugene |
Koonin |
Evolution of gene expression networks |
| Eugene |
Koonin |
On the origin of cells, genomes, nuclei, and viruses |
| Dusan |
Kordis |
Where is the root of eukaryotes: new insights from retroelement phylogenomics |
| Carolin |
Kosiol |
Modelling codon substitution patterns and natural selection |
| Sridhar |
Kudaravalli |
A Map of Recent Positive Selection in the Human Genome |
| Rob |
Kulathinal |
Comparative genomics by microarray hybridization in Drosophila |
| Sudhir |
Kumar |
Sources of Errors and Confidence in Molecular Divergence Times |
| Shigehiro |
Kuraku |
Detecting gene losses: a search for developmental genes missing only in mammals |
| Ahmet |
Kurdoglu |
A comparative study of multiple alignment programs and evolutionary distance estimation |
| Erika |
Kvikstad |
CONTRIBUTION OF INSERTION/DELETION EVENTS TO SEX CHROMOSOME ARCHITECTURE AS INFERRED FROM HUMAN-CHIMPANZEE GENOMIC ALIGNMENTS |
| Alex |
Lancaster |
Patterns of selection across amino acid sites in HLA proteins: statistical and functional correlations |
| Francois-Joseph |
Lapointe |
Why choose between supertrees and supermatrices when you can use both? |
| Amanda |
Larracuente |
Fate of Y-linked genes translocated to the autosomes in D. pseudoobscura |
| Michael |
Lassig |
Adaptations to fluctuating selection in Drosophila |
| Lilian |
Lau |
Detection of Positive Selection in Human Extracellular Domains |
| Dennis |
Lavrov |
Gene recruitment: a common and important process in tRNA evolution |
| Renny |
Lee |
Encephalitozoon cuniculi may not be the best representative for microsporidian genomes: genome sequence surveys of two diverse species of microsporidia reveal unexpected amounts of non-coding DNA and a lack of compaction |
| Jana |
Lemau |
Characterization and Functional Evaluation of Novel Vitamin D Receptor Interacting Proteins (VIPs) Required for Bone Development |
| Philippe |
Lemey |
Estimating absolute rates of synynomous and nonsynonymous substitutions for within host HIV genealogies |
| Adam |
Leon |
Molecular Evolution of the Human Intergenic Transcriptome |
| Martin |
Lercher |
Adaptive Evolution of Bacterial Metabolic Networks by Horizontal Gene Transfer |
| Chenhong |
Li |
Development of genome-scale nuclear gene markers for the tree of ray-finned fishes |
| Wen-Hsiung |
Li |
Evolution of cis elements and gene expression |
| Han |
Liang |
Coordination between Regulation at the Transcriptional and Post-transcriptional Levels |
| Han |
Liang |
SWAKK: a Web Server for Detecting Positive Selection in Proteins Using a Sliding Window Substitution Rate Analysis |
| David |
Liberles |
Lineage-specific evolution of Myostatin and Glp-1 |
| Kian Huat |
Lim |
A High Performance Scalable Pairwise Sequence Alignment Tool in Clustering Environments |
| Valerie |
Limpright |
Maintenance of necessary spliceosomal components in the highly reduced genome of the microsporidian parasite Encephalitozoon cuniculi |
| Paul |
Litman |
Evolution of the invasive trophoblast in hominoids: patterns of selection on fetal and maternally expressed metalloproteinases and their inhibitors |
| Renyi |
Liu |
The evolution of gene repertoires in flowering plants |
| John |
Logsdon |
Phylogenomics of sex: early eukaryotic origins and evolution of meiosis |
| Kirk |
Lohmueller |
Analysis of SNP transmission patterns across the human genome in HapMap trios |
| Dagan |
Loisel |
Ancient polymorphism and functional variation in the primate MHC-DQA1 5’ cis-regulatory region |
| Manyuan |
Long |
New Genes Behind Males |
| Stuart |
Longhorn |
Ameliorating the effects of mutational biases in phylogenetic analyses of arachnid mitochondrial genomes. |
| Matzkin |
Luciano |
The molecular basis of host adaptation in cactophilic Drosophila: Molecular evolution of Glutathione S-transferase (GstD1) in Drosophila mojavensis |
| David |
Lynn |
Detecting the Effects of Selection on Bovine Immune Genes. |
| Jianxin |
Ma |
Shift And Evolutionary Dynamics of a Centromeric Region of Rice Revealed by Physical Anchoring Orthologs in Related Oryza Genomes |
| John |
Macpherson |
Genomewide Estimates of Adaptation and Constraint in Drosophila |
| Anna-Sapfo |
Malaspinas |
Analysis of the complete sequence of the Mastodon mitochondrial genome |
| Raymond |
Malfavon-Borja |
Characterization and Quantification of a Retrotransposon and its Implications for the Penaeus Stylirostris Genome |
| Stacy |
Mantooth |
The evolution of North American regional deserts: perspectives from the biogeographic history of antelope squirrels (Ammospermophilus) |
| Joseph |
Maranville |
Human population genetic analyses reveal unusual evolutionary histories for X-chromosome genes that escape inactivation |
| Paul |
Marjoram |
Fast "Coalescent" Simulation of Genome-wide Data |
| Paul |
Marjoram |
Analysis of Single Feature Polymorphism Data |
| Pradeep Reddy |
Marri |
Has Mycobacterium avium subsp. paratuberculosis acquired virulence factors to compensate for the absence of PE/PGRS/PPE genes ? |
| Fergal |
Martin |
A gene cluster that has independently assembled at least twice: the phenylacetate degradation locus |
| Joanna |
Masel |
3’ UTRs are a source of evolutionary novelty in yeast coding regions |
| John |
Masly |
Gene transposition as a novel cause of hybrid sterility in Drosophila |
| Susan |
Masta |
RNA evolution in mitochondrial genomes in arachnids |
| Mikhail |
Matz |
Molecular evolution of complexity: an experimental approach. |
| Itay |
Mayrose |
Improving Among Site Rate Variation Models |
| Angela |
McCann |
Simulated & empirical analysis of conditioned reconstruction for inferring phylogenetic relationships among whole genomes. |
| David |
McClellan |
TreeSAAP: Selection on Amino Acid Properties |
| Andrea |
McCollum |
Multiple origins of drug resistant malaria |
| James |
McInerney |
Using supertree, network and total evidence approaches to understand the conflicting signals regarding the phylogenetic position of the mitochondrion. |
| Richard |
Meisel |
Origin and Evolution of Segmental Duplications in the Drosophila pseudoobscura Genome |
| Jorge |
Mena-Ali |
Reduced diversity of S-alleles and widespread presence of S-like sequences in three populations of Solanum carolinense |
| Daniel |
Merl |
Investigating variability in substitution rates of AMA-1 using Bayesian random effects models |
| Cassandra |
Miller-Butterworth |
Evolutionary differences in the dopamine transporter genes of macaques and humans |
| Cassandra |
Miller-Butterworth |
Genetic and phenotypic differences between the Long-fingered bats, Miniopterus natalensis and M. fraterculus |
| Vladimir |
Minin |
Investigating an evolutionary footprint of recombination hot-spots in the HIV genome |
| Kazuharu |
Misawa |
Estimating Codon Substitution Rates between Human and Mouse |
| Ankit Kumar |
Misra |
Development of an approach to find out unique conserved region among conserved regions of protein or gene sequences in evolution right from the very primitive species to highly advanced species. |
| Michael |
Miyamoto |
Evolutionary Developmental Genetics to Coalescent Population Genetics: Two Studies of Vertebrate Cartilage and Viral/Human Demography |
| Richard |
Moore |
Investigating the role of selection in establishing recent gene duplicates in the genome of Arabidopsis thaliana |
| Nancy |
Moran |
The biggest bacterial genome |
| Geoffrey |
Morris |
Reorganization of adjacent gene relationships in yeast genomes by whole genome duplication and gene deletion |
| Sandra |
Mortimer |
Functional studies of SL trans-splicing in the ascidian tunicate Ciona intestinalis CiTnI (troponinI) gene |
| Jan |
Mrazek |
Simple Sequence Repeats in Mycoplasma Genomes |
| Mrinalini |
Muralidharan |
Characterizing Cholinesterase Homologues in Plants |
| William |
Murphy |
Novel Gene Acquisition on Carnivore Y Chromosomes |
| William |
Murphy |
A Molecular Timetree for Mammalian Evolution |
| Sean |
Myles |
Screening for evidence of selection on NIDDM-associated mutations in Polynesians |
| So |
Nakagawa |
Comparative evolutionary analysis of the sequences around the translation initiation site among various eukaryotic species |
| Yoji |
Nakamura |
Rate and polarity of gene fusion and fission in higher plant genomes |
| Jongmin |
Nam |
Evolutionary change of the numbers of homeobox genes in bilateral animals |
| Hema |
Narra |
A proteomic approach to discover the structure of ORFan genes |
| Jennifer |
Neary |
Comparing the Metabolic Networks of Four Vibrio Species |
| Jennifer |
Neary |
Genome Evolution and Functional Divergence in Yersinia |
| Linda |
Neaves |
Intraspecific Genetic Variation and the Phylogeography of the Western Grey Kangaroo, Macropus fuliginosus |
| Aurora |
Nedelcu |
The evolutionary origin of an altruistic gene |
| Masatoshi |
Nei |
Adaptive and neutral evolution of phenotypic characters |
| Stuart |
Newfeld |
Experimental Exploitation of Evolutionary Conservation via Transgenes in Drosophila |
| Robert |
Nicholls |
Pseudoscience: the Mkrn1-p1 pseudogene is not expressed, imprinted, nor functional, hence disproving the mammalian pseudogene trans regulation model. |
| Gabrielle |
Nickel |
Positive selection of transcription factor genes on the human lineage |
| Rasmus |
Nielsen |
A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees |
| Yoshihito |
Niimura |
Evolutionary Dynamics of Olfactory Receptor Genes in Vertebrates |
| Phillip |
Nista |
Using spacial autocorrelation models to detect signatures of selection across the genome of Drosophila simulans |
| Heather |
Norton |
Sequence Variation in the Human Pigmentation Candidate Gene SLC24A5 |
| Tetyana |
Nosenko |
Evolution of a Complex Plastid Proteome Through Endosymbiotic Gene Transfer. |
| Andrea |
Novelletto |
A HUMAN DERIVED ALDH5A1 CODING VARIANT IS REPLACING THE ANCESTRAL ALLELE SHARED WITH PRIMATES |
| John |
Novembre |
Inference in the continuous isolation-by-distance model: Using low-frequency alleles to estimate scaled dispersal distance |
| John |
Novembre |
Inference in the continuous isolation-by-distance model: Using low-frequency alleles to estimate scaled dispersal distance |
| Michael |
Nowak |
Quantifying the biasing effects of fossil data on the temporal calibration of molecular divergence time estimates: a simulation study employing the program r8s |
| Leonard |
Nunney |
The clade-site method for detecting natural selection at the molecular level |
| Leonard |
Nunney |
The Evolution of Host-Specificity in Xylella fastidiosa |
| Dmitry |
Nurminsky |
Transcriptoinal Regulation in Drosophila Testes: Insights Provided by 'omics |
| John |
O'Brien |
Estimating Phylogenies and Rates to First Order |
| Mary |
O'Connell |
Estimating the number of positively selected amino acids in the human lineage – what makes us human? |
| Timothy |
O'Connor |
Categorical Comparison of Synonymous Codon Bias using the Codon Usage Database |
| Patrick |
O'Grady |
Phylogenomics of Drosophilidae: Implications for Systematics and Genome Evolution. |
| Colm |
O'hUigin |
Changes in the Neutral Landscape of Eutherian Mammals |
| Howard |
Ochman |
Something about bacterial genomes |
| T. Heath |
Ogden |
Direct optimization vs. traditional phylogenetics: Alignment and topological accuracy |
| Atsushi |
Ogura |
TARGETS OF SEX-RATIO SUPPRESSORS IN DROSOPHILA REVEALED BY MICROARRAY AND GENOME ANALYSES |
| Atsushi |
Ogura |
Mechanism of sex-ratio distortion in Drosophila revealed by microarray and genome analyses |
| Akiko |
Ogura-Noda |
Evolutionary studies of the nervous system based upon comparative genomics |
| Tomoko |
Ohta |
The nearly neutral theory in genome era |
| Brian |
Oliver |
Sex-biased expression in the genus Drosophila |
| Juan |
Opazo |
Phylogenetic relationships and divergence times among primates |
| Alicia |
Oshlack |
Insights on measuring gene expression evolution from multi-species micrarrays |
| Tatsuya |
Ota |
Toward positional cloning of the genes determining heterostylous self-incompatibility in buckwheat |
| Michael |
Ott |
Inference of Large Phylogenetic Trees - A HPC Perspective |
| Timothy |
Paape |
Relative phylogenetic estimate of a population bottleneck based on Solanaceae S-locus genealogy |
| Timothy |
Paape |
Relative phylogenetic estimate of a historical bottleneck using S-RNase genealogical data |
| Maria |
Pacheco |
A comparative study of the genetic diversity of the 42Kda fragment of the merozoite surface protein 1 in Plasmodium falciparum and P. vivax |
| Csaba |
Pal |
Is evolution predictable? A case study on minimal metabolic networks |
| Peter |
Palese |
WHAT CAN WE LEARN FROM RECONSTRUCTING THE EXTINCT 1918 PANDEMIC INFLUENZA VIRUS? |
| Jeffrey |
Palmer |
Horizontal Gene Transfer in Plants and the Root of the Tree of Life |
| Madhav |
Pandey |
Spatial genetic structure of sycamore maple (Acer pseudoplatanus L.) |
| Balázs |
Papp |
Can we predict epistasis? – A systems biology study of synthetic lethal interactions in the metabolic network of yeast |
| Laura |
Parfrey |
Evaluating Support for Eukaryotic Supergroups and the Search for Sister Groups of Foraminifera |
| Pleuni |
Pennings |
Sweeps from recurrent mutation |
| Marcos |
Perez-Losada |
Past Population Dynamics of Gonorrhea in Baltimore |
| Nicole |
Perna |
Plants, Animals (and Insects, too) – Genome Evolution and Host Range Specialization in Enterobacteria |
| George |
Perry |
Population genetics of opsin genes in the aye-aye: implications for color vision in a nocturnal primate |
| Dmitri |
Petrov |
Population dynamics of a comprehensive set of transposable elements in D. melanogaster |
| Markus |
Pfenninger |
Phylogeography and ecological niche inference: a fruitful marriage |
| Nicola |
Pickup |
Cis-regulatory evolution in the chordate genome |
| John |
Pinney |
Understanding the evolution of protein interaction networks |
| Davide |
Pisani |
A genomic supertree of life |
| Davide |
Pisani |
Opsin phylogeny and the origin of dim-light vision in Vertebrata |
| David |
Plachetzki |
A new class of metazoan opsin from Hydra and Nematostella |
| Vincent |
Plagnol |
Evidence for ancestral structure in human populations |
| Ondrej |
Podlaha |
Accelerated evolution of the sperm-egg binding protein SED1 in the primate ancestoral lineage. |
| Nalini |
Polavarapu |
Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses |
| Daniel |
Pollard |
Evidence for evolution of functional transcription factor binding sites from genome-wide binding data in Drosophila |
| David |
Pollock |
Ancestral posterior distributions, function, and bias |
| John |
Pool |
Genetic Structure and Population History of sub-Saharan Drosophila melanogaster |
| David |
Posada |
Selection of models of nucleotide substitution with Modeltest |
| Arjun |
Prasad |
Exploring the mammalian phylogeny: empowering traditional phylogenetic algorithms with large genomic sequence data sets |
| Sonja |
Prohaska |
Evolutionary Changes within Regulatory Non-Coding Sequences in Duplicated Genes |
| Molly |
Przeworski |
The signature of directional selection in polymorphism data |
| Pedro |
Puigbo |
‘Amelioration’ of the mitochondrial genes encoded in the human nuclear genome. |
| Michael |
Purugganan |
Molecular evolution of plant adaptations: A lession from from rice domestication |
| Andrea |
Putnam |
Heterogeneity in divergence times among sex-linked markers in two swallowtail butterfly species |
| JAFAR |
QASEM |
A Comparative study of the nucleotide sequence of RepA gene among five Helicobacter pylori plasmids. |
| Hong |
Qin |
A study of network clustering approaches based on shortest path distance |
| Hong |
Qin |
A comparative study of clustering approaches based on shortest-path distance in the protein interaction network |
| Hadi |
Quesneville |
A combined evidence framework for the detailed annotation of transposable elements in genome sequences. |
| Megan |
Quinn |
Molecular phylogenetics of West Indian burrowing reptiles (Amphisbaena) |
| Thomas |
Quinn |
Efficient isolation of a non-LTR retrotransposon (CR1) for use in avian systematics |
| Thomas |
Quinn |
Evolutionary history of the Trumpeter Swan; A species in rebound |
| Narayanan |
Raghupathy |
A comparative genomic study of insulin signaling evolution |
| Jeremy |
Raincrow |
Patterns and Frequencies of Mobile DNA Element Insertions within and Flanking Hox Clusters of Different Chordate Lineages |
| Andrew |
Rambaut |
The origin and consequences of HIV-1 genetic diversity |
| David |
Rasko |
Bacillus anthracis and close relatives - multi-genome sequence analysis and beyond.. |
| Denise |
Raterman |
A comparative genomics approach to elucidating acrosin’s role in mammalian fertilization |
| Benjamin |
Redelings |
Alignment Uncertainty and the Tree of Life |
| Alissa |
Resch |
Positive and negative selection in synonymous sites of mammalian genes |
| Adrian |
Reyes-Prieto |
Endosymbiotic Gene Transfer and the Evolution of the First Photosynthetic Eukaryotes |
| Aaron |
Richardson |
Massive Horizontal Gene Transfer in the Mitochondrial Genome of Amborella trichopoda |
| Lyndsey |
Robertson |
Isolation and Characterization of a Myostatin-like gene in the shrimp species Penaeus stylirostris |
| Tessa |
Robinson |
Genome Diversity within the Ciliate Species Chilodonella uncinata |
| Alfred |
Roca |
Cyto-nuclear genomic dissociation in African elephant species. |
| Naiara |
Rodríguez-Ezpeleta |
Extracting Phylogenetic Signal from Genome-scale Datasets |
| Richard |
Roehrdanz |
Histone and ribosomal RNA gene clusters linked in tandem array |
| Richard |
Roehrdanz |
Molecular phylogeny and species diversity of Aphthona flea beetles introduced to North America. |
| Kim |
Roelants |
Timing morphological diversification in the anuran tadpole: Insights from a multi-gene data set |
| Stephanie |
Rogers |
The Genesis and Exaptation of V(D)J Recombination |
| Igor |
Rogozin |
Evolution of adaptive immune receptors in jawless vertebrates |
| Wenne |
Roman |
Sequencing of mitochodrial DNA recombined variants from the Baltic mussel Mytilus |
| Michael |
Rosenberg |
How should gaps be treated in parsimony? A comparison of approaches using simulation |
| Noah |
Rosenberg |
Discordance of species trees with their most likely gene trees |
| Usman |
Roshan |
Improving progressive alignment for phylogeny reconstruction using better guide-trees |
| Usman |
Roshan |
Boosting phylogeny reconstruction using Recursive-Iterative-DCM3 |
| Usman |
Roshan |
Improved Phylogenetic Motif Detection Using Parsimony |
| Jeffrey |
Ross-Ibarra |
Speciation and introgression in the genus Zea |
| Julio |
Rozas |
Comparative Genomics of the Odorant-Binding Protein Multigene Family in Drosophila |
| Valentin |
Ruano-Rubio |
Testing the neutral fixation of hetero-oligomerism in the molecular chaperone CCT |
| Leonid |
Rusin |
Signal concentration in multiple sequence alignment: empirical and simulation studies |
| Amy |
Russell |
Integrating phylogenetics and population genetics for biogeographic analyses |
| Claudia |
Russo |
Divergence times of penaeid shrimps and aspects of historical biogeography of the group |
| Shigeru |
Saito |
Evolution of thermoTRP ion channel homologs in vertebrates |
| Hiroaki |
Sakai |
Molecular phylogeny of cultivated and wild rice species disclosed by comparative genomics. |
| Tovah |
Salcedo |
Molecular population genetics of innate immunity in house mice, Mus domesticus |
| Maria |
Sanchez-Puerta |
The heterotrophic dinoflagellate Crypthecodinium cohnii descends from a plastid-bearing ancestor, suggesting an earlier acquisition of plastids |
| Michael |
Sanderson |
Software tools for phylogenetic data mining |
| Baldauf |
Sandie |
Molecular Phylogeny and Morphological Evolution in Social Amoebas |
| Sara |
Sandstedt |
The presence of lic2B, a lipooligosaccharide biosynthesis gene, is associated with greater host-to-host transmission of nontypeable Haemophilus influenzae isolated from the throats of healthy children. |
| Slim |
Sassi |
To be a pseudogene or not a pseudogene, that’s the seminal question. |
| Slim |
Sassi |
Paleogenetic Resurrections to Understand In Vitro Phenotypic Change |
| Yoko |
Satta |
The origin and diversity of temperature sensory receptors in mammals |
| Hiromi |
Sawai |
Genetic diversity of domestic chickens |
| Sara |
Sawyer |
Putting Evolution to the Test: Mechanisms of retroviral restriction revealed through signatures of positive selection. |
| Rahul |
Saxena |
Identification of regions responsible for maintaining enzymatic stability of peptide deformylase from Mycobacterium tuberculosis |
| Karl |
Schmid |
Evolutionary genomics of a selectively maintained, transspecific protein domain polymorphism of a receptor-like kinase in the genus Arabidopsis |
| Deena |
Schmidt |
Waiting for Regulatory Sequences to Appear |
| Gerald M. |
Schneeweiss |
Horizontal gene transfer of plastid genes in the non-photosynthetic plant Orobanche sensu lato (Orobanchaceae) |
| Douglas |
Scofield |
Intron Evolution in Untranslated Regions of Genes |
| Tae-Kun |
Seo |
Calculating Bootstrap Probabilities of Phylogeny with Multilocus Sequence Data |
| Beth |
Shapiro |
To what extent do RNA virus genomes maintain information about their deep evolutionary relationships? |
| Peng |
Shi |
Shift of vomeronasal receptor gene repertoires in the emergence of land vertebrates |
| Meng-Shin |
Shiao |
Adaptive Evolution of Rodent Insulin Genes with Origin of New Insulin Retrogenes |
| Yury |
Shimansky |
Mathematical model of adaptive force produced by stress-related regulation of mutation rate |
| Valia |
Shoja |
Comprehensive analysis of tandemly arrayed genes in mammalian genomes |
| Joana |
Silva |
Comparative genomics of apicomplexan parasites: local variation in substitution rates |
| Dawn |
Simon |
A total evidence approach for reconstructing the evolutionary history of group II introns |
| Ishwardeep |
Singh |
Comparison of Clustering Algorithms for Analyzing Microarray Data |
| Nadia |
Singh |
Patterns of molecular evolution on the Drosophila X chromosome |
| Montgomery |
Slatkin |
The causes of asymmetric non-concordance of gene trees in the human-chimp-gorilla clade |
| Frances |
Smyth |
IDENTIFYING SELECTION SHIFTS DURING THE EVOLUTION OF THE HEAT-SHOCK PROTEIN 70 kDa (HSP70) FAMILY OF PROTEINS |
| Mehmet |
Somel |
What can mouse models tell us about human-chimpazee phenotypic differences? |
| Xiang |
Song |
Genomic Resources for Tree of Life. |
| Jason |
Stajich |
Gene family evolution across the Fungal kingdom: lineage-specific expansions and contractions |
| John |
Stavrinides |
Pulling ahead in the arms race: quantum evolution of virulence genes in bacterial pathogens |
| Tomoko |
Steen |
Once Again: Life’s Work of Tomoko Ohta |
| Cynthia |
Steiner |
Genetic architecture of adaptive color patterning in beach mice (Peromyscus polionotus) |
| Adi |
Stern |
An Evolutionary Space-Time Model with Varying Among-Site Dependencies |
| Daniel |
Stoebel |
Causes of selection on lac operon regulation |
| Nina |
Stoletzki |
Synonymous codon use in Escherichia coli – selection for translational accuracy |
| Anne |
Stone |
Population history of Pan: A view from the Y chromosome |
| Jay |
Storz |
Molecular adaptation of hemoglobin function in high-altitude deer mice |
| Jay |
Storz |
Balanced polymorphism at duplicated hemoglobin genes in deer mice (Peromyscus) |
| Daryn |
Stover |
of human genetic variation at Collagen Type I alpha 1 (COLIα1): A gene encoding the major structural protein of bone |
| Gary |
Stuart |
GASPIPE: progress towards an integrated gene and species phylogenomics inference package |
| Bing |
Su |
Genetic variations, rapid evolution and functional association of the human spermatogenesis related gene NYD-SP12 |
| Sankar |
Subramanian |
Proteome-wide patterns of human disease-associated mutations |
| RYUICHI |
SUGINO |
Selection for more of the same product as the driving force of concerted evolution of duplicated genes |
| Jingchun |
Sun |
Phylogenetic profiles for the prediction of protein-protein interactions: how to select reference organisms? |
| Shamil |
Sunyaev |
Deleterious mutations and human disease |
| Yoshiyuki |
Suzuki |
Three-dimensional window analysis for detecting positive selection at structural regions of proteins |
| Willie |
Swanson |
Molecular Evolution of Reproductive Genes: Insights Into Reproductive Isolation |
| Wesley |
Swingley |
Roseobacter denitrificans: A ubiquitous marine phototroph with a novel carbon-fixation pathway |
| Tara |
Swope |
Retroid Agents in Arabidopsis thaliana (mouse-ear cress) and Oryza Sativa ssp. japonica cultivar (rice); a Comparative Analysis |
| Hidenori |
Tachida |
The fixed and shift models of nearly neutral mutation |
| Naoyuki |
Takahata |
Evolution of primate sex chromosomes and sex-linked genes |
| Koichiro |
Tamura |
Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 |
| Haibao |
Tang |
Large Scale EST Resource Compilation and Applications for Phylogenomics of Major Crop Plants |
| Sander |
Tans |
Repressor-operator divergence pathways constructed from measured data |
| Yoshio |
Tateno |
Evolution of LINEs and its implication for MHC and primate divergences |
| Diethard |
Tautz |
An estimate of the frequency of positive selection in natural populations of the house mouse |
| Emma |
Teeling |
The plastic evolution of echolocation in bats |
| Jacob |
Tennessen |
Beyond dN/dS: Is functional divergence correlated with natural selection as evidenced by nonsynonymous and synonymous substitutions? |
| Brett |
Thompson |
Discovering the Correlation Between Evolutionary Genomics and Protein-Protein Interactions |
| Jeffrey |
Thorne |
An overview of statistical methods for divergence time estimation from molecular sequence data |
| Joe |
Thornton |
Evolution of complexity: insights from ancestral gene resurrection |
| Kevin |
Thornton |
Controlling the false positive rate in genome scans for selection |
| Raul |
Tito |
Alu insertion polymorphisms and mtDNA in Peruvian populations: Implications for the genetic history and population structure of Peru |
| Christina |
Toft |
Comparative genomic analysis of endosymbiotic bacteria of insects |
| Chris |
Toomajian |
A nonparametric test reveals recent selection for rapid flowering in the Arabidopsis thaliana genome |
| Dara |
Torgerson |
Adaptive Evolution of Gene Regulation in Humans Inferred from Patterns of Polymorphism and Divergence in Sequences Flanking Coding Regions |
| Brian |
Tuch |
More than one means to an end: Evolution of cis- and trans-elements yields alternate transcriptional circuits with identical logic |
| Leslie |
Turner |
Evolution of testes-expressed proteins in monogamous and promiscuous species of Peromyscus (deer mice) |
| Monica |
Uddin |
Relatively rapid evolution of primate mitochondrial ATP synthase |
| Marcy |
Uyenoyama |
Estimation of population parameters from partially resolved trees |
| Ines |
Van Bocxlaer |
Multigene evidence for parallel radiations of ranoid frogs in Late Cretaceous Gondwana |
| Yves |
Van de Peer |
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana |
| Ilke |
van Hazel |
Molecular evolution of vertebrate short wavelength sensitive (SWS1) visual pigments |
| Mark |
van Passel |
Compositional Analyses of Genomic Islands in Prokaryotes |
| Marcel |
van Tuinen |
Molecular timing of the major evolutionary radiations among modern birds |
| Lucia |
Vazquez |
Isolation and characterization of En/Spm transposon in selected oak species |
| Benjamin |
Vernot |
Trees you can trust: investigating uncertainty in phylogeny reconstruction. |
| Brian |
Verrelli |
Comparative primate genetics and the evolutionary history of behavioral diseases in human populations |
| Friesen |
Vicki |
Genetic divergence in sympatric populations of storm petrels |
| Boris |
Vinatzer |
Evidence that recombination between closely related strains contributes to the evolution of host range in the plant pathogen Pseudomonas syringae |
| Pablo |
Vinuesa |
Sexual isolation among sympatric Bradyryzobium species with overlapped ecological niches |
| Todd |
Vision |
Predicting microsynteny in the presence of paleopolyploidy |
| Robert |
Wallace |
Phylogeography of influenza A H5N1: nonparametric internode migration test identifies key pathways of diffusion |
| Fitch |
Walter |
After the tree: from phylogeny to migration |
| Jun |
Wang |
Transposable element estimate on selective constraints in Drosophila genome |
| Minglei |
Wang |
The evolution of protein fold combinations |
| Wen |
Wang |
Experimental Genomic Evidence for Evolving Functional Diversity Generated by Chimeric Genes in Drosophila |
| Xiaoxia |
Wang |
Remarkable expansions of Rhox gene cluster in rodent evolution |
| Zhi |
Wang |
Biological Significance of Modular Structures in Protein Networks |
| Jillian |
Ward |
Molecular Phylogenetic Relationships between the Basal Metazoan Groups: Making Old Lineages Do New Tricks |
| Tandy |
Warnow |
How well do supertree methods work? |
| Yutaka |
Watanabe |
Spontaneous mutation spectrum in Drosophila melanogaster |
| Michael |
Waterman |
Whole Genome Optical Mapping |
| Elizabeth |
Waters |
Comparative Functional Genomics of the Small Heat Shock Proteins |
| Derek |
Wildman |
Genomic and phylogenetic analyses of variation in primate reproductive biology |
| Mark |
Wilkinson |
Semi-strict and Majority-Rule Supertrees |
| Larissa |
Williams |
Genome search for selectively important loci in Fundulus heteroclitus populations |
| Rod |
Wing |
The Oryza Map Alignment Project (OMAP): A new resource for plant comparative genomics |
| Gabriela |
Wlasiuk |
Molecular evolution of Toll-like receptor 5 in human populations. |
| Alex |
Wong |
Functional annotation of female reproductive genes in Drosophila melanogaster by coupling inferences of positive selection and knockout/knockdown studies. |
| Wendy |
Wong |
EvoGEM: a Phylogenetic Generalized Hidden Markov Model |
| Elizabeth |
Wood |
The Effects of Recombination, Gene Conversion, and Mutation on Patterns of Variation at the Strongly Selected Beta-globin Locus: The Origins of the HbS Allele Revisited |
| Chung-Shien |
Wu |
Analyses of the complete chloroplast genomes of Cycas taitungensis (Cycadales) and known seed plants suggest that extant gymnosperms are monophyletic |
| Gang |
Wu |
The effects of differential gene expression on coding sequence features: comparative studies in Escherichia coli and Saccharomyces cerevisiae with one-way ANOVA |
| Shuhai |
Xiao |
Eukaryote TimeTree and the Fossil Record |
| Xianfa |
Xie |
Epigenetic differences among Arabidopsis thaliana ecotypes |
| Yi |
Xing |
Alternative Splicing and RNA Selection Pressure: a New Force in Genome Evolution |
| Shuangchun |
Yan |
Closely related strains of the plant pathogen Pseudomonas syringae: clonal or freely recombining? |
| Ziheng |
Yang |
PAML and one wrong way for detecting natual selection |
| Soojin |
Yi |
Molecular Clock meets Primate Genomics |
| Shozo |
Yokoyama |
Molecular analyses of red-green color vision and color blindness in vertebrates |
| Hwan Su |
Yoon |
Establishment of endolithic populations of extremophilic Cyanidiales (Rhodophyta) |
| Jiaye |
Yu |
Dependence among sites in RNA evolution |
| Warner |
Yuen |
Apple Scientific Computing Update |
| Inagaki |
Yuji |
Eukaryotic phylogeny inferred from a combined data set of 28 nuclear genes |
| Alejandro |
Zamora |
Positively selected disease resistance gene orthologs in Sorghum bicolor L. Moench and other cereals identified using a comparative and evolutionary genomics strategy |
| Itzel |
Zamora-Vilchis |
Major histocompatibility complex II of the wet tropics avifauna of North Queensland, Australia: diversity and association with behavioural traits |
| Weiwei |
Zhai |
Detecting Lineage Specific Selection on Large Phylogenies |
| Jianzhi |
Zhang |
Why do hubs tend to be essential in protein networks? |
| Kangyu |
Zhang |
Accessing the divergence of regulatory interaction on recent duplicated genes in S. cerevisiae |
| Kangyu |
Zhang |
Generalizing the probability of homozygosity with arbitrarily many haploid individuals under the stepwise mutation model and beyond. |
| liqing |
zhang |
Adaptive Evolution and Frequent Gene Conversion in the Brain Expressed X-linked (BEX) Gene Family in Mammals |
| Leming |
Zhou |
Designing Spaced Seeds for Accurate Cross-Species cDNA-to-Genome Alignment with Varying Evolutionary Distances |
| Qi |
Zhou |
Neo-sex chromosomes in a mammalian species Muntiacus crinifrons |
| Yaoqi |
Zhou |
Improving multiple-sequence alignment with sequence profiles and predicted secondary structures |
| Lan |
Zhu |
A Flexible and Efficient Approach for Estimating Recombination Rate Variation from Population Genomic Data |
| Christian |
Zmasek |
phyloXML an XML language for phylogenies |
| Rebecca |
Zufall |
Implications of genome architecture on protein evolution and genome processing in ciliates |
