Joseph Felsenstein is Professor in the Departments of Genome Sciences and Biology and Adjunct Professor in the Departments of Computer Science and Statistics at the University of Washington in Seattle. He is best known for his work on phylogenetic inference, and is the author of Inferring Phylogenies, and principal author and distributor of the package of phylogenetic inference programs called PHYLIP, and is currently serving as the President of the Society for Molecular Biology & Evolution.

You can reach Joe at president.smbe@gmail.com

James McInerney is the principle investigator of the Bioinformatics and Molecular Evolution Laboratories at NUI Maynooth. He was one of the founding directors of the Irish Centre for High End Computing, an Associate Editor of Molecular Biology and Evolution, Biology Direct, and Journal of Experimental Zoology, and is currently serving as the Secretary for the Society for Molecular Biology and Evolution.

You can reach James at secretary.smbe@gmail.com

Juliette de Meaux is interested in the molecular basis of Darwinian adaptation in natural plant systems. Her works combines the approaches of population, quantitative and molecular genetics to dissect the underpinning of adaptive changes. She completed her PhD at AgroParisTech, under the supervision of Prof. Claire Neema and studied the molecular basis of host-pathogen coevolution in natural populations of common bean. She then spent her Postdoc time in the lab of Prof. Tom Mitchell-Olds at the Max Planck Institute of Chemical Ecology in Jena and worked on the evolution of cis-regulatory DNA. Since 2005, she runs her own lab, first at the Max Planck Institute of Plant Breeding in Cologne and then at the University of Münster. In January 2015, she relocated her lab at the University of Cologne. She is currently serving as the Treasurer for the Society for Molecular Biology and Evolution.

You can reach Juliette at treasurer.smbe@gmail.com

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About

The Society for Molecular Biology and Evolution is an international organization whose goals are to provide facilities for association and communication among molecular evolutionists and to further the goals of molecular evolution, as well as its practitioners and teachers. In order to accomplish these goals, the Society publishes two peer-reviewed journals, Molecular Biology and Evolution and Genome Biology and Evolution. The Society sponsors an annual meeting, as well as smaller satellite meetings or workshop on important, focused, and timely topics. It also confers honors and awards to students and researchers.

SMBE 2016

On behalf of the organising committee it is our pleasure to invite you to attend SMBE 2016 - the annual meeting of the Society for Molecular Biology and Evolution. SMBE 2016 will be held from the 3rd-7th of July at the Gold Coast Convention & Exhibition Centre, Queensland, Australia.  The meeting - including plenary talks, symposia presentations, the Walter Fitch symposium, and poster sessions - will showcase the latest research in genomics, population genetics, and molecular biology and evolution. Social activities will include an opening reception, mixers with each poster session, and a conference dinner - all social events are included with registration.  BYO scientific curiosity and surfboard.

 More information can be found HERE.

Featured News and Updates

2017 SMBE Meeting - Call for Symposia

We’re delighted to announce that the Society for Molecular Biology & Evolution is now accepting proposals for symposium topics for the 2017 Annual Meeting, taking place in Austin, Texas, USA, from July 2nd – 6th, 2017. Selection of proposals will be aimed at spanning the range of interests of SMBE members, including exciting new scientific developments, and representing the geographic and gender diversity of members.

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  • Tuesday, August 30, 2016
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SMBE 2016 Election Results

The 2016 SMBE election results are in and and we have four outstanding new officers who will begin their terms in January, 2017.

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  • Thursday, July 21, 2016
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Results of the Fall 2015 SMBE Membership Survey

Results of the Fall 2015 SMBE Membership Survey

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  • Monday, June 20, 2016
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MBE & GBE Best Graduate Student Papers Announcement

Congratulations to the winners of the Best Graduate Student Paper in MBE and Best Graduate Student Paper in GBE for the year 2015! The winners will be given a certificate, a prize of $2,000 and a travel award to the 2016 annual meeting.

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  • Tuesday, May 03, 2016
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SMBE 2016 Awards Announcement

Congratulations to the inaugural winners of the SMBE Allan Wilson Award, SMBE Mid-Career Award for Research, SMBE Community Service Award and the SMBE Lifetime Contribution Award!

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  • Friday, April 01, 2016
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SMBE 2016 Call for Satellite Meeting Proposals

SMBE is now calling for proposals for workshops/satellite meetings to be held between Fall 2016 and Fall 2017. Funds will be awarded on a competitive basis to members of the molecular evolution research community to run workshops/satellite meetings on an important, focused, and timely topic of their choice. The deadline for submission of proposals is May 15, 2016.

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  • Monday, March 21, 2016
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@OfficialSMBE Feed

MBE | Most Read

Molecular Biology and Evolution

Transmission Between Archaic and Modern Human Ancestors During the Evolution of the Oncogenic Human Papillomavirus 16

Ville N. Pimenoff, Cristina Mendes de Oliveira, Ignacio G. Bravo
Oct 7, 2016; 0:2141-214
Article

Growth Rates Made Easy

Barry G. Hall, Hande Acar, Anna Nandipati, Miriam Barlow
Jan 1, 2014; 31:232-238
Resources

Building Phylogenetic Trees from Molecular Data with MEGA

Barry G. Hall
May 1, 2013; 30:1229-1235
Resources

The neighbor-joining method: a new method for reconstructing phylogenetic trees

N Saitou, M Nei
Jul 1, 1987; 4:406-425
Original Articles

High-Resolution Phylogenetic Analysis of Southeastern Europe Traces Major Episodes of Paternal Gene Flow Among Slavic Populations

Marijana Pericic, Lovorka Barac Lauc, Irena Martinovic Klaric, Siiri Rootsi, Branka Janicijevic, Igor Rudan, Rifet Terzic, Ivanka Colak, Ante Kvesic, Dan Popovic, Ana Sijacki, Ibrahim Behluli, Dobrivoje Dordevic, Ljudmila Efremovska, Dorde D. Bajec, Branislav D. Stefanovic, Richard Villems, Pavao Rudan
Oct 1, 2005; 22:1964-1975
Research Article

Population Bottlenecks and Pleistocene Human Evolution

John Hawks, Keith Hunley, Sang-Hee Lee, Milford Wolpoff
Jan 1, 2000; 17:2-22
Review Articles

On the Origin and Domestication History of Barley (Hordeum vulgare)

A. Badr, K. M, R. Sch, H. El Rabey, S. Effgen, H. H. Ibrahim, C. Pozzi, W. Rohde, F. Salamini
Apr 1, 2000; 17:499-510
Original Articles

Y Chromosome Evidence for Anglo-Saxon Mass Migration

Michael E. Weale, Deborah A. Weiss, Rolf F. Jager, Neil Bradman, Mark G. Thomas
Jul 1, 2002; 19:1008-1021
Original Articles

Signatures of archaic adaptive introgression in present-day human populations

Fernando Racimo, Davide Marnetto, Emilia Huerta-Sanchez
Oct 18, 2016; 0:2161-216
Research Article

Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation

Sara Pinosio, Stefania Giacomello, Patricia Faivre-Rampant, Gail Taylor, Veronique Jorge, Marie Christine Le Paslier, Giusi Zaina, Catherine Bastien, Federica Cattonaro, Fabio Marroni, Michele Morgante
Oct 1, 2016; 33:2706-2719
Discoveries

Origin and Expansion of Haplogroup H, the Dominant Human Mitochondrial DNA Lineage in West Eurasia: The Near Eastern and Caucasian Perspective

U Roostalu, I Kutuev, E-L Loogvali, E Metspalu, K Tambets, M Reidla, EK Khusnutdinova, E Usanga, T Kivisild, R Villems
Feb 1, 2007; 24:436-448
Research Article

On the Origin of Darwin's Finches

Akie Sato, Herbert Tichy, Colm O'hUigin, Peter R. Grant, B. Rosemary Grant, Jan Klein
Mar 1, 2001; 18:299-311
Original Articles

Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid

Kumar S. D. Kothapalli, , Kaixiong Ye, Maithili S. Gadgil, Susan E. Carlson, Kimberly O. OBrien, Ji Yao Zhang, Hui Gyu Park, Kinsley Ojukwu, James Zou, Stephanie S. Hyon, Kalpana S. Joshi, Zhenglong Gu, Alon Keinan, J.Thomas Brenna
Jul 1, 2016; 33:1726-1739
Discoveries

Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability

Christophe J. Douady, Frederic Delsuc, Yan Boucher, W. Ford Doolittle, Emmanuel J. P. Douzery
Feb 1, 2003; 20:248-254
Original Articles

Application of Phylogenetic Networks in Evolutionary Studies

Daniel H. Huson, David Bryant
Feb 1, 2006; 23:254-267
Research Article

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura, Glen Stecher, Daniel Peterson, Alan Filipski, Sudhir Kumar
Dec 1, 2013; 30:2725-2729
Resources

Molecular Evolution and Patterns of Duplication in the SEP/AGL6-Like Lineage of the Zingiberales: A Proposed Mechanism for Floral Diversification

Roxana Yockteng, Ana M.R. Almeida, Kelsie Morioka, Elena R. Alvarez-Buylla, Chelsea D. Specht
Nov 1, 2013; 30:2401-2422
Discoveries

Genetic Diversity and Population History of the Red Panda (Ailurus fulgens) as Inferred from Mitochondrial DNA Sequence Variations

Bing Su, Yunxin Fu, Yingxiang Wang, Li Jin, Ranajit Chakraborty
Jun 1, 2001; 18:1070-1076
Original Articles

Origin of Clothing Lice Indicates Early Clothing Use by Anatomically Modern Humans in Africa

Melissa A. Toups, Andrew Kitchen, Jessica E. Light, David L. Reed
Jan 1, 2011; 28:29-32
Letter

Model-Based Verification of Hypotheses on the Origin of Modern Japanese Revisited by Bayesian Inference Based on Genome-Wide SNP Data

Shigeki Nakagome, Takehiro Sato, Hajime Ishida, Tsunehiko Hanihara, Tetsutaro Yamaguchi, Ryosuke Kimura, Shuhei Mano, Hiroki Oota, The Asian DNA Repository Consortium
Jun 1, 2015; 32:1533-1543
Discoveries

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

Koichiro Tamura, Daniel Peterson, Nicholas Peterson, Glen Stecher, Masatoshi Nei, Sudhir Kumar
Oct 1, 2011; 28:2731-2739
Research Article

Enterobacterial Repetitive Intergenic Consensus (ERIC) Sequences in Escherichia coli: Evolution and Implications for ERIC-PCR

Lindsay A. Wilson, Paul M. Sharp
Jun 1, 2006; 23:1156-1168
Research Article

Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments

Ji Yang, Wen-Rong Li, Feng-Hua Lv, San-Gang He, Shi-Lin Tian, Wei-Feng Peng, Ya-Wei Sun, Yong-Xin Zhao, Xiao-Long Tu, Min Zhang, Xing-Long Xie, Yu-Tao Wang, Jin-Quan Li, Yong-Gang Liu, Zhi-Qiang Shen, Feng Wang, Guang-Jian Liu, Hong-Feng Lu, Juha Kantanen, Jian-Lin Han, Meng-Hua Li, Ming-Jun Liu
Oct 1, 2016; 33:2576-2592
Discoveries

Melanesian and Asian Origins of Polynesians: mtDNA and Y Chromosome Gradients Across the Pacific

Manfred Kayser, Silke Brauer, Richard Cordaux, Amanda Casto, Oscar Lao, Lev A. Zhivotovsky, Claire Moyse-Faurie, Robb B. Rutledge, Wulf Schiefenhoevel, David Gil, Alice A. Lin, Peter A. Underhill, Peter J. Oefner, Ronald J. Trent, Mark Stoneking
Nov 1, 2006; 23:2234-2244
Research Article

Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences

A. J. Drummond, A. Rambaut, B. Shapiro, O. G. Pybus
May 1, 2005; 22:1185-1192
Research Article

Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site

Y Tateno, N Takezaki, M Nei
Mar 1, 1994; 11:261-277
Original Articles

Recent Insertion of an Alu Element Within a Polymorphic Human-Specific Alu Insertion

David Comas, Stephanie Plaza, Francesc Calafell, Antti Sajantila, Jaume Bertranpetit
Jan 1, 2001; 18:85-88
Letters to the Editor

Genetic Evidence for the Convergent Evolution of Light Skin in Europeans and East Asians

Heather L. Norton, Rick A. Kittles, Esteban Parra, Paul McKeigue, Xianyun Mao, Keith Cheng, Victor A. Canfield, Daniel G. Bradley, Brian McEvoy, Mark D. Shriver
Mar 1, 2007; 24:710-722
Research Article

The Protistan Origins of Animals and Fungi

Emma T. Steenkamp, Jane Wright, Sandra L. Baldauf
Jan 1, 2006; 23:93-106
Research Article

What Is the Role of Genome Duplication in the Evolution of Complexity and Diversity?

Karen D. Crow, Gunter P. Wagner
May 1, 2006; 23:887-892
Proceedings of the SMBE Tri-National Young Investigators'''' Workshop 2005

Bayesian Inference of Species Trees from Multilocus Data

Joseph Heled, Alexei J. Drummond
Mar 1, 2010; 27:570-580
Research Article

Selectionism and Neutralism in Molecular Evolution

Masatoshi Nei
Dec 1, 2005; 22:2318-2342
Review

Genetic Viability and Population History of the Giant Panda, Putting an End to the "Evolutionary Dead End"?

Baowei Zhang, Ming Li, Zejun Zhang, Benoit Goossens, Lifeng Zhu, Shanning Zhang, Jinchu Hu, Michael W. Bruford, Fuwen Wei
Aug 1, 2007; 24:1801-1810
Research Article

Variation in Evolutionary Processes at Different Codon Positions

Lee Bofkin, Nick Goldman
Feb 1, 2007; 24:513-521
Research Article

The Evolutionary History of YAP and the Hippo/YAP Pathway

Dror Hilman, Uri Gat
Aug 1, 2011; 28:2403-2417
Research Article

Evolution of Amino Acid Frequencies in Proteins Over Deep Time: Inferred Order of Introduction of Amino Acids into the Genetic Code

Dawn J. Brooks, Jacques R. Fresco, Arthur M. Lesk, Mona Singh
Oct 1, 2002; 19:1645-1655
Original Articles

Evolution and Development of the Chordates: Collagen and Pharyngeal Cartilage

Amanda L. Rychel, Shannon E. Smith, Heather T. Shimamoto, Billie J. Swalla
Mar 1, 2006; 23:541-549
Research Article

Prokaryotic Evolution in Light of Gene Transfer

J. Peter Gogarten, W. Ford Doolittle, Jeffrey G. Lawrence
Dec 1, 2002; 19:2226-2238
Original Articles

Evaluating the Use of ABBA-BABA Statistics to Locate Introgressed Loci

Simon H. Martin, John W. Davey, Chris D. Jiggins
Jan 1, 2015; 32:244-257
Methods

A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim

Michal Feldman, Michaela Harbeck, Marcel Keller, Maria A. Spyrou, Andreas Rott, Bernd Trautmann, Holger C. Scholz, Bernd Päffgen, Joris Peters, Michael McCormick, Kirsten Bos, Alexander Herbig, Johannes Krause
Nov 1, 2016; 33:2911-2923
Discoveries

Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models

Ziheng Yang, Rasmus Nielsen
Jan 1, 2000; 17:32-43
Original Articles

jModelTest: Phylogenetic Model Averaging

David Posada
Jul 1, 2008; 25:1253-1256
Letter

Genomic basis of adaptive evolution: the survival of Amur ide (Leuciscus waleckii) in an extremely alkaline environment

Jian Xu, Jiong-Tang Li, Yanliang Jiang, Wenzhu Peng, Zongli Yao, Baohua Chen, Likun Jiang, Jingyan Feng, Peifeng Ji, Guiming Liu, Zhanjiang Liu, Ruyu Tai, Chuanju Dong, Xiaoqing Sun, Zi-Xia Zhao, Yan Zhang, Jian Wang, Shangqi Li, Yunfeng Zhao, Jiuhui Yang, Xiaowen Sun, Peng Xu
Oct 20, 2016; 0:2301-230
Article

Tracing Past Human Male Movements in Northern/Eastern Africa and Western Eurasia: New Clues from Y-Chromosomal Haplogroups E-M78 and J-M12

Fulvio Cruciani, Roberta La Fratta, Beniamino Trombetta, Piero Santolamazza, Daniele Sellitto, Eliane Beraud Colomb, Jean-Michel Dugoujon, Federica Crivellaro, Tamara Benincasa, Roberto Pascone, Pedro Moral, Elizabeth Watson, Bela Melegh, Guido Barbujani, Silvia Fuselli, Giuseppe Vona, Boris Zagradisnik, Guenter Assum, Radim Brdicka, Andrey I. Kozlov, Georgi D. Efremov, Alfredo Coppa, Andrea Novelletto, Rosaria Scozzari
Jun 1, 2007; 24:1300-1311
Research Article

Orphan Worm Finds a Home: Buddenbrockia is a Myxozoan

Ana Sara Monteiro, Beth Okamura, Peter W. H. Holland
Jun 1, 2002; 19:968-971
Letters to the Editor

The Natural History of Nitrogen Fixation

Jason Raymond, Janet L. Siefert, Christopher R. Staples, Robert E. Blankenship
Mar 1, 2004; 21:541-554
Original Articles

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

Manolo Gouy, Stephane Guindon, Olivier Gascuel
Feb 1, 2010; 27:221-224
Letter

Pig Domestication and Human-Mediated Dispersal in Western Eurasia Revealed through Ancient DNA and Geometric Morphometrics

Claudio Ottoni, Linus Girdland Flink, Allowen Evin, Christina Georg, Bea De Cupere, Wim Van Neer, Laszlo Bartosiewicz, Anna Linderholm, Ross Barnett, Joris Peters, Ronny Decorte, Marc Waelkens, Nancy Vanderheyden, Francois-Xavier Ricaut, Canan Cakirlar, Ozlem Cevik, A. Rus Hoelzel, Marjan Mashkour, Azadeh Fatemeh Mohaseb Karimlu, Shiva Sheikhi Seno, Julie Daujat, Fiona Brock, Ron Pinhasi, Hitomi Hongo, Miguel Perez-Enciso, Morten Rasmussen, Laurent Frantz, Hendrik-Jan Megens, Richard Crooijmans, Martien Groenen, Benjamin Arbuckle, Nobert Benecke, Una Strand Vidarsdottir, Joachim Burger, Thomas Cucchi, Keith Dobney, Greger Larson
Apr 1, 2013; 30:824-832
Discoveries

Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent Symbiodinium Thermal Tolerances

Rachel A. Levin, Victor H. Beltran, Ross Hill, Staffan Kjelleberg, Diane McDougald, Peter D. Steinberg, Madeleine J. H. van Oppen
Sep 1, 2016; 33:2201-2215
Fast Tracks

A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes

Anders Bergstrom, Jared T. Simpson, Francisco Salinas, Benjamin Barre, Leopold Parts, Amin Zia, Alex N. Nguyen Ba, Alan M. Moses, Edward J. Louis, Ville Mustonen, Jonas Warringer, Richard Durbin, Gianni Liti
Apr 1, 2014; 31:872-888
Discoveries

GBE | Most Read

Genome Biology & Evolution

The Missing Link of Jewish European Ancestry: Contrasting the Rhineland and the Khazarian Hypotheses

Eran Elhaik
Jan 16, 2013; 5:61-74
Research Article

Localizing Ashkenazic Jews to Primeval Villages in the Ancient Iranian Lands of Ashkenaz

Ranajit Das, Paul Wexler, Mehdi Pirooznia, Eran Elhaik
Apr 19, 2016; 8:1132-1149
Research Article

Highlight: Out of Khazaria--Evidence for "Jewish Genome" Lacking

Danielle Venton
Jan 16, 2013; 5:75-76
Highlight

Roles of Mutation and Selection in Speciation: From Hugo de Vries to the Modern Genomic Era

Masatoshi Nei, Masafumi Nozawa
Nov 19, 2011; 3:812-829
Research Article

Both male-biased and female-biased genes evolve faster in fish genomes

Liandong Yang, Zhaolei Zhang, Shunping He
Oct 13, 2016; 0:2391-239
Research Article

On the Immortality of Television Sets: "Function" in the Human Genome According to the Evolution-Free Gospel of ENCODE

Dan Graur, Yichen Zheng, Nicholas Price, Ricardo B.R. Azevedo, Rebecca A. Zufall, Eran Elhaik
Mar 26, 2013; 5:578-590
Research Article

The Sequence of a 1.8-Mb Bacterial Linear Plasmid Reveals a Rich Evolutionary Reservoir of Secondary Metabolic Pathways

Marnix H. Medema, Axel Trefzer, Andriy Kovalchuk, Marco van den Berg, Ulrike Muller, Wilbert Heijne, Liang Wu, Mohammad T. Alam, Catherine M. Ronning, William C. Nierman, Roel A. L. Bovenberg, Rainer Breitling, Eriko Takano
Jul 30, 2010; 2:212-224
Research Article

Draft Genome of the Wheat Rust Pathogen (Puccinia triticina) Unravels Genome-Wide Structural Variations during Evolution

Kanti Kiran, Hukam C. Rawal, Himanshu Dubey, Rajdeep Jaswal, B.N Devanna, Deepak Kumar Gupta, Subhash C. Bhardwaj, P. Prasad, Dharam Pal, Parveen Chhuneja, P. Balasubramanian, J. Kumar, M. Swami, Amolkumar U. Solanke, Kishor Gaikwad, Nagendra K. Singh, Tilak Raj Sharma
Sep 11, 2016; 8:2702-2721
Research Article

Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments

Bruce M. Pearson, Rogier Louwen, Peter van Baarlen, Arnoud H.M. van Vliet
Sep 27, 2015; 7:2663-2679
Research Article

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

Marco Fondi, Antti Karkman, Manu V. Tamminen, Emanuele Bosi, Marko Virta, Renato Fani, Eric Alm, James O. McInerney
May 13, 2016; 8:1388-1400
Research Article

Genetic Evidence of Human Adaptation to a Cooked Diet

Rachel N. Carmody, Michael Dannemann, Adrian W. Briggs, Birgit Nickel, Emily E. Groopman, Richard W. Wrangham, Janet Kelso
Apr 13, 2016; 8:1091-1103
Research Article

LINEs between species: Evolutionary dynamics of LINE-1 retrotransposons across the eukaryotic tree of life

Atma M. Ivancevic, R. Daniel Kortschak, Terry Bertozzi, David L. Adelson
Oct 3, 2016; 0:2431-243
Research Article

Atopic Dermatitis Susceptibility Variants In Filaggrin Hitchhike Hornerin Selective Sweep

Muthukrishnan Eaaswarkhanth, Duo Xu, Colin Flanagan, Margarita Rzhetskaya, M. Geoffrey Hayes, Ran Blekhman, Nina Jablonski, Omer Gokcumen
Sep 27, 2016; 0:2421-242
Research Article

Gene Duplication and Gene Expression Changes Play a Role in the Evolution of Candidate Pollen Feeding Genes in Heliconius Butterflies

Gilbert Smith, Aide Macias-Munoz, Adriana D. Briscoe
Sep 2, 2016; 8:2581-2596
Research Article

Divergence of East Asians and Europeans Estimated Using Male- and Female-Specific Genetic Markers

Yoshio Tateno, Tomoyoshi Komiyama, Toru Katoh, Batmunkh Munkhbat, Akira Oka, Yuko Haida, Hiroyuki Kobayashi, Gen Tamiya, Hidetoshi Inoko
Mar 3, 2014; 6:466-473
Research Article

Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages

Dennis V. Lavrov, Walker Pett
Sep 26, 2016; 8:2896-2913
Invited Review

Transposable Elements and DNA Methylation Create in Embryonic Stem Cells Human-Specific Regulatory Sequences Associated with Distal Enhancers and Noncoding RNAs

Gennadi V. Glinsky
Jun 3, 2015; 7:1432-1454
Research Article

Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads

Chung-Shien Wu, Shu-Miaw Chaw, Ya-Yi Huang
Feb 1, 2013; 5:243-254
Research Article

Phylogeographic Refinement and Large Scale Genotyping of Human Y Chromosome Haplogroup E Provide New Insights into the Dispersal of Early Pastoralists in the African Continent

Beniamino Trombetta, Eugenia D'Atanasio, Andrea Massaia, Marco Ippoliti, Alfredo Coppa, Francesca Candilio, Valentina Coia, Gianluca Russo, Jean-Michel Dugoujon, Pedro Moral, Nejat Akar, Daniele Sellitto, Guido Valesini, Andrea Novelletto, Rosaria Scozzari, Fulvio Cruciani
Jul 10, 2015; 7:1940-1950
Research Article

Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species of Drosophila

Caiti S. Smukowski Heil, Chris Ellison, Matthew Dubin, Mohamed A.F. Noor
Oct 22, 2015; 7:2829-2842
Research Article

Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants

Ying Chang, Sishuo Wang, Satoshi Sekimoto, Andrea L. Aerts, Cindy Choi, Alicia Clum, Kurt M. LaButti, Erika A. Lindquist, Chew Yee Ngan, Robin A. Ohm, Asaf A. Salamov, Igor V. Grigoriev, Joseph W. Spatafora, Mary L. Berbee
Jun 12, 2015; 7:1590-1601
Research Article

Genome Sequence and Analysis of Escherichia coli MRE600, a Colicinogenic, Nonmotile Strain that Lacks RNase I and the Type I Methyltransferase, EcoKI

Chad M. Kurylo, Noah Alexander, Randall A. Dass, Matthew M. Parks, Roger A. Altman, C. Theresa Vincent, Christopher E. Mason, Scott C. Blanchard
Mar 21, 2016; 8:742-752
Genome Report

Evolutionary Insights into RNA trans-Splicing in Vertebrates

Quan Lei, Cong Li, Zhixiang Zuo, Chunhua Huang, Hanhua Cheng, Rongjia Zhou
Mar 10, 2016; 8:562-577
Invited Review

Comprehensive Phylogenetic Analysis Sheds Light on the Diversity and Origin of the MLO Family of Integral Membrane Proteins

Stefan Kusch, Lina Pesch, Ralph Panstruga
Mar 26, 2016; 8:878-895
Research Article

Interspecific Differential Expression Analysis of RNA-Seq Data Yields Insight into Life Cycle Variation in Hydractiniid Hydrozoans

Steven M. Sanders, Paulyn Cartwright
Aug 28, 2015; 7:2417-2431
Research Article

Birth-and-Death of KLK3 and KLK2 in Primates: Evolution Driven by Reproductive Biology

Patricia Isabel Marques, Rui Bernardino, Teresa Fernandes, NISC Comparative Sequencing Program, Eric D. Green, Belen Hurle, Victor Quesada, Susana Seixas
Dec 24, 2012; 4:1331-1338
Letter

Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids

Tal Dagan, Mayo Roettger, Karina Stucken, Giddy Landan, Robin Koch, Peter Major, Sven B. Gould, Vadim V. Goremykin, Rosmarie Rippka, Nicole Tandeau de Marsac, Muriel Gugger, Peter J. Lockhart, John F. Allen, Iris Brune, Irena Maus, Alfred Puhler, William F. Martin
Jan 9, 2013; 5:31-44
Research Article

Genome-Wide Identification of Long Intergenic Noncoding RNA Genes and Their Potential Association with Domestication in Pigs

Zhong-Yin Zhou, Ai-Min Li, Adeniyi C. Adeola, Yan-Hu Liu, David M. Irwin, Hai-Bing Xie, Ya-Ping Zhang
Jun 12, 2014; 6:1387-1392
Letter

Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas

Adam G. Ciezarek, Luke T. Dunning, Catherine S. Jones, Leslie R. Noble, Emily Humble, Sergio S. Stefanni, Vincent Savolainen
Oct 5, 2016; 8:3011-3021
Research Article

Environmental Epigenetics and a Unified Theory of the Molecular Aspects of Evolution: A Neo-Lamarckian Concept that Facilitates Neo-Darwinian Evolution

Michael K. Skinner
May 16, 2015; 7:1296-1302
Perspectives

Archaeal "Dark Matter" and the Origin of Eukaryotes

Tom A. Williams, T. Martin Embley
Mar 3, 2014; 6:474-481
Research Article

Elephant Transcriptome Provides Insights into the Evolution of Eutherian Placentation

Zhuo-Cheng Hou, Kirstin N. Sterner, Roberto Romero, Nandor Gabor Than, Juan M. Gonzalez, Amy Weckle, Jun Xing, Kurt Benirschke, Morris Goodman, Derek E. Wildman
May 16, 2012; 4:713-725
Research Article

Pitfalls of the Geographic Population Structure (GPS) Approach Applied to Human Genetic History: A Case Study of Ashkenazi Jews

Pavel Flegontov, Alexei Kassian, Mark G. Thomas, Valentina Fedchenko, Piya Changmai, George Starostin
Aug 16, 2016; 8:2259-2265
Perspectives

Genome-Wide Survey on Genomic Variation, Expression Divergence, and Evolution in Two Contrasting Rice Genotypes under High Salinity Stress

Shu-Ye Jiang, Ali Ma, Rengasamy Ramamoorthy, Srinivasan Ramachandran
Nov 5, 2013; 5:2032-2050
Research Article

Phylogenetic Resolution of Deep Eukaryotic and Fungal Relationships Using Highly Conserved Low-Copy Nuclear Genes

Ren Ren, Yazhou Sun, Yue Zhao, David Geiser, Hong Ma, Xiaofan Zhou
Sep 11, 2016; 8:2683-2701
Research Article

Analysis of the Opsin Repertoire in the Tardigrade Hypsibius dujardini Provides Insights into the Evolution of Opsin Genes in Panarthropoda

Lars Hering, Georg Mayer
Sep 22, 2014; 6:2380-2391
Research Article

Mitochondria, the Cell Cycle, and the Origin of Sex via a Syncytial Eukaryote Common Ancestor

Sriram G. Garg, William F. Martin
Jul 2, 2016; 8:1950-1970
Research Article

The Transcriptome of the Zoanthid Protopalythoa variabilis (Cnidaria, Anthozoa) Predicts a Basal Repertoire of Toxin-like and Venom-Auxiliary Polypeptides

Chen Huang, Jean-Etienne RL Morlighem, Hefeng Zhou, Erica P Lima, Paula B Gomes, Jing Cai, Inchio Lou, Carlos D Perez, Simon Ming Lee, Gandhi Radis-Baptista
Oct 5, 2016; 8:3045-3064
Research Article

Genomic survey of a hyperparasitic microsporidian Amphiamblys sp. (Metchnikovellidae)

Kirill V. Mikhailov, Timur G. Simdyanov, Vladimir V. Aleoshin
Sep 30, 2016; 0:2351-235
Research Article

Geographic population structure in Epstein-Barr Virus revealed by comparative genomics

Matteo Chiara, Caterina Manzari, Claudia Lionetti, Rosella Mechelli, Eleni Anastasiadou, Maria Chiara Buscarinu, Giovanni Ristori, Marco Salvetti, Ernesto Picardi, Anna Maria DErchia, Graziano Pesole, David S Horner
Sep 15, 2016; 0:2261-226
Genome Report

Transposable Element Proliferation and Genome Expansion Are Rare in Contemporary Sunflower Hybrid Populations Despite Widespread Transcriptional Activity of LTR Retrotransposons

Takeshi Kawakami, Preeti Dhakal, Angela N. Katterhenry, Chelsea A. Heatherington, Mark C. Ungerer
Sep 7, 2011; 3:156-167
Research Article

The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference

James E. Tarver, Mario dos Reis, Siavash Mirarab, Raymond J. Moran, Sean Parker, Joseph E. OReilly, Benjamin L. King, Mary J. OConnell, Robert J. Asher, Tandy Warnow, Kevin J. Peterson, Philip C.J. Donoghue, Davide Pisani
Feb 10, 2016; 8:330-344
Research Article

CRISPR Diversity and Microevolution in Clostridium difficile

Joakim M. Andersen, Madelyn Shoup, Cathy Robinson, Robert Britton, Katharina E.P. Olsen, Rodolphe Barrangou
Sep 19, 2016; 8:2841-2855
Research Article

Assembled Plastid and Mitochondrial Genomes, as well as Nuclear Genes, Place the Parasite Family Cynomoriaceae in the Saxifragales

Sidonie Bellot, Natalie Cusimano, Shixiao Luo, Guiling Sun, Shahin Zarre, Andreas Gröger, Eva Temsch, Susanne S. Renner
Aug 3, 2016; 8:2214-2230
Research Article

Maize cytolines unmask key nuclear genes that are under the control of retrograde signaling pathways in plants

Mihai Miclaus, Ovidiu Balacescu, Ioan Has, Loredana Balacescu, Voichita Has, Dana Suteu, Samuel Neuenschwander, Irene Keller, Remy Bruggmann
Oct 3, 2016; 0:2451-245
Research Article

Epigenetics and the Evolution of Darwin's Finches

Michael K. Skinner, Carlos Gurerrero-Bosagna, M. Muksitul Haque, Eric E. Nilsson, Jennifer A.H. Koop, Sarah A. Knutie, Dale H. Clayton
Aug 7, 2014; 6:1972-1989
Research Article

Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera

Snehal D. Karpe, Rikesh Jain, Axel Brockmann, Ramanathan Sowdhamini
Sep 26, 2016; 8:2879-2895
Research Article

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements

Amir Szitenberg, Soyeon Cha, Charles H. Opperman, David M. Bird, Mark L. Blaxter, David H. Lunt
Oct 5, 2016; 8:2964-2978
Research Article

"Out of Pollen" Hypothesis for Origin of New Genes in Flowering Plants: Study from Arabidopsis thaliana

Dong-Dong Wu, Xin Wang, Yan Li, Lin Zeng, David M. Irwin, Ya-Ping Zhang
Oct 27, 2014; 6:2822-2829
Letter

Evolution of a Heavy Metal Homeostasis/Resistance Island Reflects Increasing Copper Stress in Enterobacteria

Benjamin M. Staehlin, John G. Gibbons, Antonis Rokas, Thomas V. OHalloran, Jason C. Slot
Mar 22, 2016; 8:811-826
Research Article